Neuroscience

Jiakun Fu, Suhas Shrinivasan, Luca Baroni, Zhuokun Ding, Paul G. Fahey, Paweł Pierzchlewicz, Kayla Ponder, Rachel Froebe, Lydia Ntanavara, Taliah Muhammad, Konstantin F Willeke, Eric Wang, Zhiwei Ding, Dat T. Tran, Stelios Papadopoulos, Saumil Patel, Jacob Reimer, Alexander S. Ecker, Xaq Pitkow, Jan Antolik, Fabian H. Sinz, Ralf M. Haefner, Andreas S. Tolias, Katrin Franke Pattern completion and disruption characterize contextual modulation in the visual cortex bioRxiv

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Jiakun Fu, Pawel A. Pierzchlewicz, Konstantin F. Willeke, Mohammad Bashiri, Taliah Muhammad, Maria Diamantaki, Emmanouil Froudarakis, Kelli Restivo, Kayla Ponder, George H. Denfield, Fabian H. Sinz, Andreas S. Tolias, Katrin Franke Heterogeneous orientation tuning in primary visual cortex of mice diverges from Gabor-like receptive fields in primates Cell Reports

journal paper · inception loops neuroscience · cell press

Zhiwei Ding¹, Dat T. Tran¹, Kayla Ponder, Erick Cobos, Zhuokun Ding, Paul G. Fahey, Eric Wang, Taliah Muhammad, Jiakun Fu, Santiago A. Cadena, Stelios Papadopoulos, Saumil Patel, Katrin Franke, Jacob Reimer, Fabian H. Sinz, Alexander S. Ecker, Xaq Pitkow, Andreas S. Tolias Bipartite invariance in mouse primary visual cortex bioRxiv , equal contribution: ¹

preprint · neuroscience · bioRxiv

Zhuokun Ding, Paul G. Fahey, Stelios Papadopoulos, Eric Wang, Brendan Celii, Christos Papadopoulos, Alexander Kunin, Andersen Chang, Jiakun Fu, Zhiwei Ding, Saumil Patel, Kayla Ponder, J. Alexander Bae, Agnes L. Bodor, Derrick Brittain, JoAnn Buchanan, Daniel J. Bumbarger, Manuel A. Castro, Erick Cobos, Sven Dorkenwald, Leila Elabbady, Akhilesh Halageri, Zhen Jia, Chris Jordan, Dan Kapner, Nico Kemnitz, Sam Kinn, Kisuk Lee, Kai Li, Ran Lu, Thomas Macrina, Gayathri Mahalingam, Eric Mitchell, Shanka Subhra Mondal, Shang Mu, Barak Nehoran, Sergiy Popovych, Casey M. Schneider-Mizell, William Silversmith, Marc Takeno, Russel Torres, Nicholas L. Turner, William Wong, Jingpeng Wu, Wenjing Yin, Szi-chieh Yu, Emmanouil Froudarakis, Fabian H. Sinz, H. Sebastian Seung, Forrest Collman, Nuno Maçarico da Costa, R. Clay Reid, Edgar Y. Walker, Xaq Pitkow, Jacob Reimer, Andreas S. Tolias Functional connectomics reveals general wiring rule in mouse visual cortex bioRxiv

preprint · neuroscience · bioRxiv

Brendan Celii, Stelios Papadopoulos, Zhuokun Ding, Paul G. Fahey, Eric Wang, Christos Papadopoulos, Alexander Kunin, Saumil Patel, J. Alexander Bae, Agnes L. Bodor, Derrick Brittain, JoAnn Buchanan, Daniel J. Bumbarger, Manuel A. Castro, Erick Cobos, Sven Dorkenwald, Leila Elabbady, Akhilesh Halageri, Zhen Jia, Chris Jordan, Dan Kapner, Nico Kemnitz, Sam Kinn, Kisuk Lee, Kai Li, Ran Lu, Thomas Macrina, Gayathri Mahalingam, Eric Mitchell, Shanka Subhra Mondal, Shang Mu, Barak Nehoran, Sergiy Popovych, Casey M. Schneider-Mizell, William Silversmith, Marc Takeno, Russel Torres, Nicholas L. Turner, William Wong, Jingpeng Wu, Szi-chieh Yu, Wenjing Yin, Daniel Xenes, Lindsey M. Kitchell, Patricia K. Rivlin, Victoria A. Rose, Caitlyn A. Bishop, Brock Wester, Emmanouil Froudarakis, Edgar Y. Walker, Fabian H. Sinz, H. Sebastian Seung, Forrest Collman, Nuno Maçarico da Costa, R. Clay Reid, Xaq Pitkow, Andreas S. Tolias, Jacob Reimer NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions bioRxiv

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Katrin Franke¹, Konstantin F. Willeke¹, Kayla Ponder, Mario Galdamez, Taliah Muhammad, Saumil Patel, Emmanouil Froudarakis, Jacob Reimer, Fabian H. Sinz, Andreas S. Tolias State-dependent pupil dilation rapidly shifts visual feature selectivity Nature , equal contribution: ¹

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Shan Shen, Xiaolong Jiang, Federico Scala, Jiakun Fu, Paul Fahey, Dimitry Kobak, Zhenghuan Tan, Jacob Reimer, Fabian H. Sinz, Andreas S. Tolias Distinct organization of two cortico-cortical feedback pathways Nature Communications

journal paper · neuroscience · bioRxiv nature comm.

MICrONS Consortium, J. Alexander Bae, Mahaly Baptiste, Agnes L. Bodor, Derrick Brittain, JoAnn Buchanan, Daniel J. Bumbarger, Manuel A. Castro, Brendan Celii, Erick Cobos, Forrest Collman, Nuno Maçarico da Costa, Sven Dorkenwald, Leila Elabbady, Paul G. Fahey, Tim Fliss, Emmanouil Froudakis, Jay Gager, Clare Gamlin, Akhilesh Halageri, James Hebditch, Zhen Jia, Chris Jordan, Daniel Kapner, Nico Kemnitz, Sam Kinn, Selden Koolman, Kai Kuehner, Kisuk Lee, Kai Li, Ran Lu, Thomas Macrina, Gayathri Mahalingam, Sarah McReynolds, Elanine Miranda, Eric Mitchell, Shanka Subhra Mondal, Merlin Moore, Shang Mu, Taliah Muhammad, Barak Nehoran, Oluwaseun Ogedengbe, Christos Papadopoulos, Stelios Papadopoulos, Saumil Patel, Xaq Pitkow, Sergiy Popovych, Anthony Ramos, R. Clay Reid, Jacob Reimer, Casey M. Schneider-Mizell, H. Sebastian Seung, Ben Silverman, William Silversmith, Amy Sterling, Fabian H. Sinz, Cameron L. Smith, Shelby Suckow, Zheng H. Tan, Andreas S. Tolias, Russel Torres, Nicholas L. Turner, Edgar Y. Walker, Tianyu Wang, Grace Williams, Sarah Williams, Kyle Willie, Ryan Willie, William Wong, Jingpeng Wu, Chris Xu, Runzhe Yang, Dimitri Yatsenko, Fei Ye, Wenjing Yin, Szi-chieh Y Functional connectomics spanning multiple areas of mouse visual cortex biorXiv

preprint · neuroscience · biorXiv

Fabian H. Sinz, Carolin Sachgau, Jörg Henninger, Jan Benda, Jan Grewe Simultaneous spike-time locking to multiple frequencies Journal of Neurophysiology 123(6)

journal paper · neuroscience electrosensory · JNeuroPhys bioRxiv docker github data

Cathryn R. Cadwell, Federico Scala, Paul G Fahey, Dmitry Kobak, Fabian H. Sinz, Per Johnsson, Shuang Li, R. James Cotton, Rickard Sandberg, Philipp Berens, Xiaolong Jiang, Andreas S. Tolias Cell type composition and circuit organization of clonally related excitatory neurons in the juvenile mouse neocortex eLife

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Jörg Henninger, Fabian Sinz, Ruediger Krahe, Jan Benda Tracking activity patterns of a multispecies community of gymnotiform weakly electric fish in their neotropical habitat without tagging Journal of Experimental Biology

journal paper · neuroscience · bioRxiv JEB

Paul G. Fahey, Taliah Muhammad, Cameron Smith, Emmanouil Froudarakis, Erick Cobos, Jiakun Fu, Edgar Y. Walker, Dimitri Yatsenko, Fabian H. Sinz, Jacob Reimer, Andreas S. Tolias A global map of orientation tuning in mouse visual cortex biorxiv

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X. Jiang, S. Shen, F. Sinz, J. Reimer, C.R. Cadwell, P. Berens, A.S. Ecker, S. Patel, G.H. Denfield, E. Froudarakis, S. Li, E. Walker, A.S. Tolias Response to Comment on "principles of connectivity among morphologically defined cell types in adult neocortex" Science, 353

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X. Jiang, S. Shen, C. R. Cadwell, P. Berens, F. Sinz, A. S. Ecker, S. Patel, A. S. Tolias Principles of connectivity among morphologically defined cell types in adult neocortex Science, 350, aac9462-aac9462

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A. Stöckl, F. Sinz, J. Benda, J. Grewe Encoding of social signals in all three electrosensory pathways of Eigenmannia virescens Journal of Neurophysiology, 112(9)

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E. Froudarakis , P. Berens , A. S. Ecker , R. J. Cotton , F. H. Sinz , D. Yatsenko , P. Saggau , M. Bethge , A. S. Tolias Population code in mouse V1 facilitates readout of natural scenes through increased sparseness Nature neuroscience, 17, 851-7

journal paper · neuroscience · nature neuroscience

D. Görür, C.E. E. Rasmussen, A.S. S. Tolias, F. Sinz, N.K. K Logothetis Modelling Spikes with Mixtures of Factor Analysers Pattern Recognition Proc 26th DAGM Symposium LNCS 3175, 3175, 391-398

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