Neuroscience

machine learning and neuroscience
neuroscience

We regularly contribute to the analysis, theoretical interpretation and experimental design of neuroscience research. Particularly, we are interested in the functional and anatomical organization of visual cortex.

walker offenberg sinz willeke elumalai pierzchlewicz

Publications

Lab members are shown in this color. Preprints are shown in this color.

2022

Jiakun Fu, Konstantin F. Willeke, Pawel A. Pierzchlewicz, Taliah Muhammad, George H. Denfield, Fabian H. Sinz, Andreas S. Tolias Hetereogenous orientation tuning across sub-regions of receptive fields of V1 neurons in mice Cell Press Sneak Preview (cell press)

2021

Katrin Franke, Konstantin F. Willeke, Kayla Ponder, Mario Galdamez, Taliah Muhammad, Saumil Patel, Emmanouil Froudarakis, Jacob Reimer, Fabian H. Sinz, Andreas S. Tolias Behavioral state tunes mouse vision to ethological features through pupil dilation biorXiv (biorXiv)
Thomas Macrina, Kisuk Lee, Ran Lu, Nicholas L. Turner, Jingpeng Wu, Sergiy Popovych, William Silversmith, Nico Kemnitz, J. Alexander Bae, Manuel A. Castro, Sven Dorkenwald, Akhilesh Halageri, Zhen Jia, Chris Jordan, Kai Li, Eric Mitchell, Shanka Subhra Mondal, Shang Mu, Barak Nehoran, William Wong, Szi-chieh Yu, Agnes L. Bodor, Derrick Brittain, JoAnn Buchanan, Daniel J. Bumbarger, Erick Cobos, Forrest Collman, Leila Elabbady, Paul G. Fahey, Emmanouil Froudarakis, Daniel Kapner, Sam Kinn, Gayathri Mahalingam, Stelios Papadopoulos, Saumil Patel, Casey M. Schneider-Mizell, Fabian H. Sinz, Marc Takeno, Russel Torres, Wenjing Yin, Xaq Pitkow, Jacob Reimer, Andreas S. Tolias, R. Clay Reid, Nuno Maçarico da Costa, H. Sebastian Seung Petascale neural circuit reconstruction: automated methods biorXiv (biorXiv)
MICrONS Consortium, J. Alexander Bae, Mahaly Baptiste, Agnes L. Bodor, Derrick Brittain, JoAnn Buchanan, Daniel J. Bumbarger, Manuel A. Castro, Brendan Celii, Erick Cobos, Forrest Collman, Nuno Maçarico da Costa, Sven Dorkenwald, Leila Elabbady, Paul G. Fahey, Tim Fliss, Emmanouil Froudakis, Jay Gager, Clare Gamlin, Akhilesh Halageri, James Hebditch, Zhen Jia, Chris Jordan, Daniel Kapner, Nico Kemnitz, Sam Kinn, Selden Koolman, Kai Kuehner, Kisuk Lee, Kai Li, Ran Lu, Thomas Macrina, Gayathri Mahalingam, Sarah McReynolds, Elanine Miranda, Eric Mitchell, Shanka Subhra Mondal, Merlin Moore, Shang Mu, Taliah Muhammad, Barak Nehoran, Oluwaseun Ogedengbe, Christos Papadopoulos, Stelios Papadopoulos, Saumil Patel, Xaq Pitkow, Sergiy Popovych, Anthony Ramos, R. Clay Reid, Jacob Reimer, Casey M. Schneider-Mizell, H. Sebastian Seung, Ben Silverman, William Silversmith, Amy Sterling, Fabian H. Sinz, Cameron L. Smith, Shelby Suckow, Zheng H. Tan, Andreas S. Tolias, Russel Torres, Nicholas L. Turner, Edgar Y. Walker, Tianyu Wang, Grace Williams, Sarah Williams, Kyle Willie, Ryan Willie, William Wong, Jingpeng Wu, Chris Xu, Runzhe Yang, Dimitri Yatsenko, Fei Ye, Wenjing Yin, Szi-chieh Y Functional connectomics spanning multiple areas of mouse visual cortex biorXiv (biorXiv)

2020

Fabian H. Sinz, Carolin Sachgau, Jörg Henninger, Jan Benda, Jan Grewe Simultaneous spike-time locking to multiple frequencies Journal of Neurophysiology 123(6) (JNeuroPhys) · (bioRxiv) · (docker) · (github) · (data)
Cathryn R. Cadwell, Federico Scala, Paul G Fahey, Dmitry Kobak, Fabian H. Sinz, Per Johnsson, Shuang Li, R. James Cotton, Rickard Sandberg, Philipp Berens, Xiaolong Jiang, Andreas S. Tolias Cell type composition and circuit organization of clonally related excitatory neurons in the juvenile mouse neocortex eLife (eLife) · (bioRxiv) · (github)
Shan Shen, Xiaolong Jiang, Federico Scala, Jiakun Fu, Paul Fahey, Dimitry Kobak, Zhenghuan Tan, Jacob Reimer, Fabian H. Sinz, Andreas S. Tolias Distinct organization of two cortico-cortical feedback pathways biorxiv (bioRxiv)
Jörg Henninger, Fabian Sinz, Ruediger Krahe, Jan Benda Tracking activity patterns of a multispecies community of gymnotiform weakly electric fish in their neotropical habitat without tagging Journal of Experimental Biology (bioRxiv) · (JEB)

2019

Paul G. Fahey, Taliah Muhammad, Cameron Smith, Emmanouil Froudarakis, Erick Cobos, Jiakun Fu, Edgar Y. Walker, Dimitri Yatsenko, Fabian H. Sinz, Jacob Reimer, Andreas S. Tolias A global map of orientation tuning in mouse visual cortex biorxiv (bioRxiv) · (twitter)

Oct 2018 - Neuronal Intelligence Lab Start

2016

X. Jiang, S. Shen, F. Sinz, J. Reimer, C.R. Cadwell, P. Berens, A.S. Ecker, S. Patel, G.H. Denfield, E. Froudarakis, S. Li, E. Walker, A.S. Tolias Response to Comment on "principles of connectivity among morphologically defined cell types in adult neocortex" Science, 353 (docker) · (github) · (science)

2015

X. Jiang, S. Shen, C. R. Cadwell, P. Berens, F. Sinz, A. S. Ecker, S. Patel, A. S. Tolias Principles of connectivity among morphologically defined cell types in adult neocortex Science, 350, aac9462-aac9462 (code) · (science)

2014

A. Stöckl, F. Sinz, J. Benda, J. Grewe Encoding of social signals in all three electrosensory pathways of Eigenmannia virescens Journal of Neurophysiology, 112(9) (code) · (pdf)
E. Froudarakis , P. Berens , A. S. Ecker , R. J. Cotton , F. H. Sinz , D. Yatsenko , P. Saggau , M. Bethge , A. S. Tolias Population code in mouse V1 facilitates readout of natural scenes through increased sparseness Nature neuroscience, 17, 851-7 (nature neuroscience)

2004

D. Görür, C.E. E. Rasmussen, A.S. S. Tolias, F. Sinz, N.K. K Logothetis Modelling Spikes with Mixtures of Factor Analysers Pattern Recognition Proc 26th DAGM Symposium LNCS 3175, 3175, 391-398 (pdf)