Neuroscience
Lab members are shown in this color.
2024
Jiakun Fu, Suhas Shrinivasan, Luca Baroni, Zhuokun Ding, Paul G. Fahey, Paweł Pierzchlewicz, Kayla Ponder, Rachel Froebe, Lydia Ntanavara, Taliah Muhammad, Konstantin F Willeke, Eric Wang, Zhiwei Ding, Dat T. Tran, Stelios Papadopoulos, Saumil Patel, Jacob Reimer, Alexander S. Ecker, Xaq Pitkow, Jan Antolik, Fabian H. Sinz, Ralf M. Haefner, Andreas S. Tolias, Katrin Franke
Pattern completion and disruption characterize contextual modulation in the visual cortex
bioRxiv
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Jiakun Fu, Pawel A. Pierzchlewicz, Konstantin F. Willeke, Mohammad Bashiri, Taliah Muhammad, Maria Diamantaki, Emmanouil Froudarakis, Kelli Restivo, Kayla Ponder, George H. Denfield, Fabian H. Sinz, Andreas S. Tolias, Katrin Franke
Heterogeneous orientation tuning in primary visual cortex of mice diverges from Gabor-like receptive fields in primates
Cell Reports
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2023
Zhiwei Ding1, Dat T. Tran1, Kayla Ponder, Erick Cobos, Zhuokun Ding, Paul G. Fahey, Eric Wang, Taliah Muhammad, Jiakun Fu, Santiago A. Cadena, Stelios Papadopoulos, Saumil Patel, Katrin Franke, Jacob Reimer, Fabian H. Sinz, Alexander S. Ecker, Xaq Pitkow, Andreas S. Tolias
Bipartite invariance in mouse primary visual cortex
bioRxiv
, equal contribution: 1
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Zhuokun Ding, Paul G. Fahey, Stelios Papadopoulos, Eric Wang, Brendan Celii, Christos Papadopoulos, Alexander Kunin, Andersen Chang, Jiakun Fu, Zhiwei Ding, Saumil Patel, Kayla Ponder, J. Alexander Bae, Agnes L. Bodor, Derrick Brittain, JoAnn Buchanan, Daniel J. Bumbarger, Manuel A. Castro, Erick Cobos, Sven Dorkenwald, Leila Elabbady, Akhilesh Halageri, Zhen Jia, Chris Jordan, Dan Kapner, Nico Kemnitz, Sam Kinn, Kisuk Lee, Kai Li, Ran Lu, Thomas Macrina, Gayathri Mahalingam, Eric Mitchell, Shanka Subhra Mondal, Shang Mu, Barak Nehoran, Sergiy Popovych, Casey M. Schneider-Mizell, William Silversmith, Marc Takeno, Russel Torres, Nicholas L. Turner, William Wong, Jingpeng Wu, Wenjing Yin, Szi-chieh Yu, Emmanouil Froudarakis, Fabian H. Sinz, H. Sebastian Seung, Forrest Collman, Nuno Maçarico da Costa, R. Clay Reid, Edgar Y. Walker, Xaq Pitkow, Jacob Reimer, Andreas S. Tolias
Functional connectomics reveals general wiring rule in mouse visual cortex
bioRxiv
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Brendan Celii, Stelios Papadopoulos, Zhuokun Ding, Paul G. Fahey, Eric Wang, Christos Papadopoulos, Alexander Kunin, Saumil Patel, J. Alexander Bae, Agnes L. Bodor, Derrick Brittain, JoAnn Buchanan, Daniel J. Bumbarger, Manuel A. Castro, Erick Cobos, Sven Dorkenwald, Leila Elabbady, Akhilesh Halageri, Zhen Jia, Chris Jordan, Dan Kapner, Nico Kemnitz, Sam Kinn, Kisuk Lee, Kai Li, Ran Lu, Thomas Macrina, Gayathri Mahalingam, Eric Mitchell, Shanka Subhra Mondal, Shang Mu, Barak Nehoran, Sergiy Popovych, Casey M. Schneider-Mizell, William Silversmith, Marc Takeno, Russel Torres, Nicholas L. Turner, William Wong, Jingpeng Wu, Szi-chieh Yu, Wenjing Yin, Daniel Xenes, Lindsey M. Kitchell, Patricia K. Rivlin, Victoria A. Rose, Caitlyn A. Bishop, Brock Wester, Emmanouil Froudarakis, Edgar Y. Walker, Fabian H. Sinz, H. Sebastian Seung, Forrest Collman, Nuno Maçarico da Costa, R. Clay Reid, Xaq Pitkow, Andreas S. Tolias, Jacob Reimer
NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
bioRxiv
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2022
Katrin Franke1, Konstantin F. Willeke1, Kayla Ponder, Mario Galdamez, Taliah Muhammad, Saumil Patel, Emmanouil Froudarakis, Jacob Reimer, Fabian H. Sinz, Andreas S. Tolias
State-dependent pupil dilation rapidly shifts visual feature selectivity
Nature
, equal contribution: 1
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Shan Shen, Xiaolong Jiang, Federico Scala, Jiakun Fu, Paul Fahey, Dimitry Kobak, Zhenghuan Tan, Jacob Reimer, Fabian H. Sinz, Andreas S. Tolias
Distinct organization of two cortico-cortical feedback pathways
Nature Communications
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2021
MICrONS Consortium, J. Alexander Bae, Mahaly Baptiste, Agnes L. Bodor, Derrick Brittain, JoAnn Buchanan, Daniel J. Bumbarger, Manuel A. Castro, Brendan Celii, Erick Cobos, Forrest Collman, Nuno Maçarico da Costa, Sven Dorkenwald, Leila Elabbady, Paul G. Fahey, Tim Fliss, Emmanouil Froudakis, Jay Gager, Clare Gamlin, Akhilesh Halageri, James Hebditch, Zhen Jia, Chris Jordan, Daniel Kapner, Nico Kemnitz, Sam Kinn, Selden Koolman, Kai Kuehner, Kisuk Lee, Kai Li, Ran Lu, Thomas Macrina, Gayathri Mahalingam, Sarah McReynolds, Elanine Miranda, Eric Mitchell, Shanka Subhra Mondal, Merlin Moore, Shang Mu, Taliah Muhammad, Barak Nehoran, Oluwaseun Ogedengbe, Christos Papadopoulos, Stelios Papadopoulos, Saumil Patel, Xaq Pitkow, Sergiy Popovych, Anthony Ramos, R. Clay Reid, Jacob Reimer, Casey M. Schneider-Mizell, H. Sebastian Seung, Ben Silverman, William Silversmith, Amy Sterling, Fabian H. Sinz, Cameron L. Smith, Shelby Suckow, Zheng H. Tan, Andreas S. Tolias, Russel Torres, Nicholas L. Turner, Edgar Y. Walker, Tianyu Wang, Grace Williams, Sarah Williams, Kyle Willie, Ryan Willie, William Wong, Jingpeng Wu, Chris Xu, Runzhe Yang, Dimitri Yatsenko, Fei Ye, Wenjing Yin, Szi-chieh Y
Functional connectomics spanning multiple areas of mouse visual cortex
biorXiv
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2020
Fabian H. Sinz, Carolin Sachgau, Jörg Henninger, Jan Benda, Jan Grewe
Simultaneous spike-time locking to multiple frequencies
Journal of Neurophysiology 123(6)
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Cathryn R. Cadwell, Federico Scala, Paul G Fahey, Dmitry Kobak, Fabian H. Sinz, Per Johnsson, Shuang Li, R. James Cotton, Rickard Sandberg, Philipp Berens, Xiaolong Jiang, Andreas S. Tolias
Cell type composition and circuit organization of clonally related excitatory neurons in the juvenile mouse neocortex
eLife
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Jörg Henninger, Fabian Sinz, Ruediger Krahe, Jan Benda
Tracking activity patterns of a multispecies community of gymnotiform weakly electric fish in their neotropical habitat without tagging
Journal of Experimental Biology
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2019
Paul G. Fahey, Taliah Muhammad, Cameron Smith, Emmanouil Froudarakis, Erick Cobos, Jiakun Fu, Edgar Y. Walker, Dimitri Yatsenko, Fabian H. Sinz, Jacob Reimer, Andreas S. Tolias
A global map of orientation tuning in mouse visual cortex
biorxiv
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2016
X. Jiang, S. Shen, F. Sinz, J. Reimer, C.R. Cadwell, P. Berens, A.S. Ecker, S. Patel, G.H. Denfield, E. Froudarakis, S. Li, E. Walker, A.S. Tolias
Response to Comment on "principles of connectivity among morphologically defined cell types in adult neocortex"
Science, 353
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2015
X. Jiang, S. Shen, C. R. Cadwell, P. Berens, F. Sinz, A. S. Ecker, S. Patel, A. S. Tolias
Principles of connectivity among morphologically defined cell types in adult neocortex
Science, 350, aac9462-aac9462
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2014
A. Stöckl, F. Sinz, J. Benda, J. Grewe
Encoding of social signals in all three electrosensory pathways of Eigenmannia virescens
Journal of Neurophysiology, 112(9)
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E. Froudarakis , P. Berens , A. S. Ecker , R. J. Cotton , F. H. Sinz , D. Yatsenko , P. Saggau , M. Bethge , A. S. Tolias
Population code in mouse V1 facilitates readout of natural scenes through increased sparseness
Nature neuroscience, 17, 851-7
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2004
D. Görür, C.E. E. Rasmussen, A.S. S. Tolias, F. Sinz, N.K. K Logothetis
Modelling Spikes with Mixtures of Factor Analysers
Pattern Recognition Proc 26th DAGM Symposium LNCS 3175, 3175, 391-398
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